Usage

Before you can get started, you’ll need a de-identification profile. You can load a built-in profile from the mrscrub package, or supply one of your own.

Arguments

The main command line tool is scrub.py which accepts the following arguments

• -c|--config: a built-in de-identification profile, or a custom one

• -i|--input: directory of DICOM files

• -o|--output: directory to save de-identified “scrubbed” files

Running

The primary command line tool is scrub.py

using a built-in profile

To use a built-in de-identification profile, pass the name of the profile to the -c|--config argument. The following example uses the SSBC_v1.0 profile

scrub.py -c SSBC_v1.0 -i <input dir> -o <output dir>

using a custom profile

To use a custom de-identification profile, pass the filename to the -c|--config argument. The following example assumes your profile was saved as ./profile.yaml

scrub.py -c ./profile.yaml -i <input dir> -o <output dir>